Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11603.1Response regulator. (156 aa)    
Predicted Functional Partners:
AKU12052.1
Response regulator receiver modulated diguanylate cyclase.
   
 0.898
AKU12065.1
Hypothetical protein.
   
 0.874
AKU10705.1
Diguanylate cyclase with PAS/PAC sensor.
 
 0.837
AKU12862.1
Hypothetical protein.
  
     0.770
AKU10216.1
Hypothetical protein.
   
 0.724
AKU11984.1
Diguanylate cyclase; Contains PAS/PAC and GAF sensors.
 
 0.690
AKU12542.1
Diguanylate cyclase/phosphodiesterase.
 
 0.682
AKU13615.1
Hypothetical protein.
  
 0.644
AKU10764.1
Hypothetical protein.
   
 0.613
AKU11202.1
Hypothetical protein.
 
   
 0.610
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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