Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11710.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
AKU11709.1
RND superfamily exporter.
 
  
 0.953
AKU11707.1
Hypothetical protein.
 
  
 0.921
AKU11708.1
Hypothetical protein.
 
     0.919
AKU14416.1
Hypothetical protein.
 
  
 0.814
AKU13895.1
RND superfamily exporter.
 
  
 0.809
AKU12859.1
Hypothetical protein.
 
  
 0.802
AKU14414.1
OrfB.
 
  
 0.795
AKU12415.1
Putative exporter, RND superfamily protein.
 
  
 0.794
AKU12857.1
RND efflux transporter.
 
  
 0.794
AKU12323.1
Transporter.
 
  
 0.793
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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