Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AKU11813.1Short chain dehydrogenase. (243 aa)    
Predicted Functional Partners:
AKU10916.1
AMP-dependent synthetase and ligase.
  
 
 0.773
AKU12205.1
3-ketoacyl-(acyl-carrier-protein) reductase.
 
 
 0.693
AKU14577.1
Short-chain dehydrogenase/reductase SDR.
 
 
 0.675
AKU12434.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase.
 
 
 0.669
AKU12360.1
Oxidoreductase.
 
 
 0.663
AKU12347.1
DitB.
 
 
 0.650
AKU14237.1
NAD-dependent epimerase/dehydratase.
 
 
 0.650
AKU12388.1
2,4-dienoyl-CoA reductase.
 
 
 0.639
AKU12403.1
3-oxoacyl-ACP reductase.
 
 
 0.634
AKU12333.1
Protein DitI.
 
 
 0.633
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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