STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11815.1Inhibiting acetyltransferase for acetyl-CoA synthetase. (901 aa)    
Predicted Functional Partners:
AKU13472.1
Hypothetical protein.
 
     0.679
AKU11814.1
Hypothetical protein.
  
    0.660
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.649
bzdT
BzdT.
  
 
 0.581
AKU14504.1
BzdT protein.
  
 
 0.581
AKU12780.1
Pyruvate oxidoreductase.
  
 
 0.556
AKU10916.1
AMP-dependent synthetase and ligase.
  
  
 0.546
AKU14050.1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
  
 0.540
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.439
AKU11813.1
Short chain dehydrogenase.
  
    0.431
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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