STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11896.1DNA internalization-related competence protein. (783 aa)    
Predicted Functional Partners:
AKU10775.1
Hypothetical protein.
 
  
 0.902
AKU09946.1
SMF protein, Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
  
 0.901
dnaX
DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
  
  0.738
AKU13534.1
Type IV fimbrial biogenesis protein, prepilin cysteine protease; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.726
AKU13998.1
Flp pilus assembly protein, protease CpaA.
  
  
 0.726
AKU11250.1
DNA protecting protein DprA.
  
  
 0.717
AKU13110.1
DNA polymerase III, delta subunit.
 
   
 0.715
AKU14559.1
Hypothetical protein.
  
  
 0.711
AKU12240.1
Complex sensory protein.
  
  
 0.702
AKU10069.1
Type II secretion system protein F.
  
  
 0.691
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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