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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11921.1Transcriptional regulator, AraC family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
radA
DNA repair protein, RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
     
 0.804
AKU11199.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.673
AKU10936.1
Regulatory helix-turn-helix protein; LysR family protein 204; Belongs to the LysR transcriptional regulatory family.
  
     0.634
AKU10263.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.610
AKU11922.1
Major facilitator superfamily MFS_1.
  
  
 0.554
AKU11919.1
TetR family transcriptional regulator.
   
 
 0.535
AKU11917.1
Hypothetical protein.
       0.485
AKU11918.1
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.485
AKU12844.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.473
AKU11804.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.441
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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