AKU11925.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKU11925.1

Glycoprotease. (230 aa)

Predicted Functional Partners:

AKU13196.1

0.981

AKU11924.1

0.966

tsaD

0.959

AKU11923.1

0.923

AKU10479.1

0.897

tadA

0.654

bzdT

0.558

AKU14504.1

0.558

guaA

0.550

AKU11926.1

0.550

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10479.1	AKU11925.1	AzCIB_0574	AzCIB_2030	biotin--acetyl-CoA-carboxylase ligase.	Glycoprotease.	0.897
AKU10479.1	guaA	AzCIB_0574	AzCIB_1821	biotin--acetyl-CoA-carboxylase ligase.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.617
AKU10479.1	tadA	AzCIB_0574	AzCIB_2833	biotin--acetyl-CoA-carboxylase ligase.	Hypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.	0.890
AKU11923.1	AKU11924.1	AzCIB_2028	AzCIB_2029	DNA polymerase-related protein, bacteriophage-type.	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	0.865
AKU11923.1	AKU11925.1	AzCIB_2028	AzCIB_2030	DNA polymerase-related protein, bacteriophage-type.	Glycoprotease.	0.923
AKU11923.1	AKU11926.1	AzCIB_2028	AzCIB_2031	DNA polymerase-related protein, bacteriophage-type.	Hypothetical protein.	0.550
AKU11924.1	AKU11923.1	AzCIB_2029	AzCIB_2028	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	DNA polymerase-related protein, bacteriophage-type.	0.865
AKU11924.1	AKU11925.1	AzCIB_2029	AzCIB_2030	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	Glycoprotease.	0.966
AKU11924.1	AKU11926.1	AzCIB_2029	AzCIB_2031	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	Hypothetical protein.	0.550
AKU11924.1	guaA	AzCIB_2029	AzCIB_1821	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.495
AKU11925.1	AKU10479.1	AzCIB_2030	AzCIB_0574	Glycoprotease.	biotin--acetyl-CoA-carboxylase ligase.	0.897
AKU11925.1	AKU11923.1	AzCIB_2030	AzCIB_2028	Glycoprotease.	DNA polymerase-related protein, bacteriophage-type.	0.923
AKU11925.1	AKU11924.1	AzCIB_2030	AzCIB_2029	Glycoprotease.	Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.	0.966
AKU11925.1	AKU11926.1	AzCIB_2030	AzCIB_2031	Glycoprotease.	Hypothetical protein.	0.550
AKU11925.1	AKU13196.1	AzCIB_2030	AzCIB_3303	Glycoprotease.	Hypothetical protein.	0.981
AKU11925.1	AKU14504.1	AzCIB_2030	AzCIB_4618	Glycoprotease.	BzdT protein.	0.558
AKU11925.1	bzdT	AzCIB_2030	AzCIB_1608	Glycoprotease.	BzdT.	0.558
AKU11925.1	guaA	AzCIB_2030	AzCIB_1821	Glycoprotease.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.550
AKU11925.1	tadA	AzCIB_2030	AzCIB_2833	Glycoprotease.	Hypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.	0.654
AKU11925.1	tsaD	AzCIB_2030	AzCIB_3225	Glycoprotease.	Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.959