Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11947.1Hypothetical protein. (297 aa)    
Predicted Functional Partners:
AKU11948.1
Hypothetical protein; Belongs to the MtfA family.
       0.821
AKU11949.1
Flavodoxin protein.
       0.779
AKU11946.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.567
AKU13888.1
Putative aminotransferase.
      0.453
AKU10984.1
Hypothetical protein.
  
     0.441
AKU11452.1
Hypothetical protein.
 
     0.431
AKU11950.1
Hypothetical protein.
       0.424
AKU10434.1
Hypothetical protein.
 
     0.410
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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