Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKU11959.1Putative phosphoribosyltransferase. (245 aa)    
Predicted Functional Partners:
AKU12632.1
Putative phosphoribosyltransferase.
     0.975
AKU11956.1
Hypothetical protein; Belongs to the MEMO1 family.
  
    0.750
AKU11957.1
Hypothetical protein.
  
    0.738
AKU11958.1
Pyruvate formate-lyase activating enzyme.
       0.725
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
     
 0.638
AKU11955.1
Hypothetical protein.
       0.575
AKU11264.1
Hypothetical protein.
   
 
 0.477
AKU11192.1
Hypothetical protein.
  
     0.474
AKU11952.1
2-5 RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.457
AKU13796.1
CDP-6-deoxy-delta-3,4-glucoseen reductase.
  
 
 0.442
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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