Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11989.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
AKU11988.1
Hypothetical protein.
       0.636
AKU11985.1
Hypothetical protein.
       0.615
AKU11986.1
Hypothetical protein.
       0.615
AKU11987.1
Hypothetical protein.
       0.615
AKU11990.1
Nitrate ABC transporter periplasmic nitrate-binding protein.
       0.565
AKU11991.1
Nitrate ABC transporter permease.
       0.550
AKU11992.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
       0.550
AKU11984.1
Diguanylate cyclase; Contains PAS/PAC and GAF sensors.
       0.474
AKU11993.1
Putative oxidoreductase.
       0.425
AKU11994.1
Ferredoxin.
       0.418
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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