Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12008.1Subtilisin-like protease. (233 aa)    
Predicted Functional Partners:
AKU13397.1
Hypothetical protein; Belongs to the peptidase S8 family.
  
     0.667
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.542
AKU11881.1
Hypothetical protein.
  
 
 0.514
AKU12429.1
Cytochrome P450.
   
 0.482
AKU12439.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.482
AKU13391.1
Hypothetical protein.
   
 
 0.479
AKU14567.1
Hypothetical protein.
 
 0.425
AKU10046.1
ATPase, AAA family protein.
 
 
 0.421
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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