STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU12044.1Transcriptional regulator, AraC family. (343 aa)    
Predicted Functional Partners:
AKU12026.1
Sarcosine oxidase delta subunit family protein.
 
    0.756
AKU12025.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.751
AKU12024.1
Sarcosine oxidase gamma subunit family protein.
 
    0.745
AKU12027.1
Sarcosine oxidase beta subunit family protein.
  
     0.717
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
    0.559
AKU12036.1
Creatinase/creatine amidinohydrolase.
 
   
 0.547
rpoD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.481
AKU12043.1
Cytosine/purines uracil thiamine allantoin permease.
 
     0.476
AKU12042.1
Creatininase.
 
     0.471
AKU10263.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.434
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.