Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12090.1Hypothetical protein. (90 aa)    
Predicted Functional Partners:
AKU12091.1
Hypothetical protein.
       0.795
AKU12085.1
Putative transcription regulator.
       0.791
AKU12089.1
Putative lipoprotein.
       0.787
AKU12088.1
Putative ABC-2 type transport system permease protein.
       0.786
AKU12086.1
Putative copper transport system periplasmic-binding protein.
       0.768
AKU12087.1
Putative ATP-binding protein.
       0.748
AKU12084.1
Putative transcription regulator.
       0.723
AKU12083.1
Nitrous-oxide reductase.
       0.409
AKU12092.1
Rubrerythrin/nigerythrin-like protein.
       0.405
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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