AKU12092.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKU12092.1

Rubrerythrin/nigerythrin-like protein. (161 aa)

Predicted Functional Partners:

AKU12093.1

0.829

AKU14509.1

0.707

AKU10832.1

0.601

fur

0.537

AKU12298.1

0.524

AKU12593.1

0.509

AKU13099.1

0.509

AKU12094.1

0.506

fur-2

0.494

AKU12085.1

0.411

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10832.1	AKU12092.1	AzCIB_0927	AzCIB_2197	Hypothetical protein.	Rubrerythrin/nigerythrin-like protein.	0.601
AKU12085.1	AKU12092.1	AzCIB_2190	AzCIB_2197	Putative transcription regulator.	Rubrerythrin/nigerythrin-like protein.	0.411
AKU12092.1	AKU10832.1	AzCIB_2197	AzCIB_0927	Rubrerythrin/nigerythrin-like protein.	Hypothetical protein.	0.601
AKU12092.1	AKU12085.1	AzCIB_2197	AzCIB_2190	Rubrerythrin/nigerythrin-like protein.	Putative transcription regulator.	0.411
AKU12092.1	AKU12093.1	AzCIB_2197	AzCIB_2198	Rubrerythrin/nigerythrin-like protein.	Rubredoxin-type Fe(Cys)4 protein.	0.829
AKU12092.1	AKU12094.1	AzCIB_2197	AzCIB_2199	Rubrerythrin/nigerythrin-like protein.	Rubredoxin reductase.	0.506
AKU12092.1	AKU12298.1	AzCIB_2197	AzCIB_2403	Rubrerythrin/nigerythrin-like protein.	Hypothetical protein.	0.524
AKU12092.1	AKU12593.1	AzCIB_2197	AzCIB_2700	Rubrerythrin/nigerythrin-like protein.	Alkyl hydroperoxide reductase AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	0.509
AKU12092.1	AKU13099.1	AzCIB_2197	AzCIB_3206	Rubrerythrin/nigerythrin-like protein.	Peroxiredoxin.	0.509
AKU12092.1	AKU14509.1	AzCIB_2197	AzCIB_4623	Rubrerythrin/nigerythrin-like protein.	Rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.	0.707
AKU12092.1	fur	AzCIB_2197	AzCIB_3013	Rubrerythrin/nigerythrin-like protein.	Ferric uptake regulation protein; Belongs to the Fur family.	0.537
AKU12092.1	fur-2	AzCIB_2197	AzCIB_3916	Rubrerythrin/nigerythrin-like protein.	Ferric uptake regulator, Fur family; Belongs to the Fur family.	0.494
AKU12093.1	AKU12092.1	AzCIB_2198	AzCIB_2197	Rubredoxin-type Fe(Cys)4 protein.	Rubrerythrin/nigerythrin-like protein.	0.829
AKU12093.1	AKU12094.1	AzCIB_2198	AzCIB_2199	Rubredoxin-type Fe(Cys)4 protein.	Rubredoxin reductase.	0.856
AKU12093.1	AKU12593.1	AzCIB_2198	AzCIB_2700	Rubredoxin-type Fe(Cys)4 protein.	Alkyl hydroperoxide reductase AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	0.405
AKU12093.1	AKU13099.1	AzCIB_2198	AzCIB_3206	Rubredoxin-type Fe(Cys)4 protein.	Peroxiredoxin.	0.405
AKU12093.1	AKU14509.1	AzCIB_2198	AzCIB_4623	Rubredoxin-type Fe(Cys)4 protein.	Rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.	0.557
AKU12093.1	fur	AzCIB_2198	AzCIB_3013	Rubredoxin-type Fe(Cys)4 protein.	Ferric uptake regulation protein; Belongs to the Fur family.	0.479
AKU12093.1	fur-2	AzCIB_2198	AzCIB_3916	Rubredoxin-type Fe(Cys)4 protein.	Ferric uptake regulator, Fur family; Belongs to the Fur family.	0.410
AKU12094.1	AKU12092.1	AzCIB_2199	AzCIB_2197	Rubredoxin reductase.	Rubrerythrin/nigerythrin-like protein.	0.506