Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12135.1Hypothetical protein. (65 aa)    
Predicted Functional Partners:
AKU12136.1
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
    0.666
AKU12179.1
Protein of unknown function DUF1328.
  
    0.585
AKU12134.1
Putative lipoprotein.
  
  
 0.561
AKU12142.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.507
AKU12133.1
Hypothetical protein.
       0.404
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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