AKU12208.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKU12208.1

Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (625 aa)

Predicted Functional Partners:

AKU12209.1

0.982

AKU12210.1

0.965

AKU12207.1

0.956

AKU10250.1

0.900

AKU12630.1

0.900

AKU14145.1

0.894

AKU11519.1

0.888

AKU14516.1

0.884

mbdB2

0.883

AKU11148.1

0.879

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10250.1	AKU12207.1	AzCIB_0345	AzCIB_2312	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter ATP-binding protein.	0.667
AKU10250.1	AKU12208.1	AzCIB_0345	AzCIB_2313	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.900
AKU10250.1	AKU12210.1	AzCIB_0345	AzCIB_2315	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter periplasmic binding protein.	0.643
AKU11148.1	AKU12207.1	AzCIB_1243	AzCIB_2312	Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter ATP-binding protein.	0.831
AKU11148.1	AKU12208.1	AzCIB_1243	AzCIB_2313	Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.879
AKU11148.1	AKU12210.1	AzCIB_1243	AzCIB_2315	Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter periplasmic binding protein.	0.773
AKU11519.1	AKU12207.1	AzCIB_1618	AzCIB_2312	ABC-transporter; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter ATP-binding protein.	0.768
AKU11519.1	AKU12208.1	AzCIB_1618	AzCIB_2313	ABC-transporter; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.888
AKU11519.1	AKU12210.1	AzCIB_1618	AzCIB_2315	ABC-transporter; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter periplasmic binding protein.	0.744
AKU12207.1	AKU10250.1	AzCIB_2312	AzCIB_0345	Branched-chain amino acid ABC transporter ATP-binding protein.	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.667
AKU12207.1	AKU11148.1	AzCIB_2312	AzCIB_1243	Branched-chain amino acid ABC transporter ATP-binding protein.	Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.	0.831
AKU12207.1	AKU11519.1	AzCIB_2312	AzCIB_1618	Branched-chain amino acid ABC transporter ATP-binding protein.	ABC-transporter; Belongs to the binding-protein-dependent transport system permease family.	0.768
AKU12207.1	AKU12208.1	AzCIB_2312	AzCIB_2313	Branched-chain amino acid ABC transporter ATP-binding protein.	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.956
AKU12207.1	AKU12209.1	AzCIB_2312	AzCIB_2314	Branched-chain amino acid ABC transporter ATP-binding protein.	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.964
AKU12207.1	AKU12210.1	AzCIB_2312	AzCIB_2315	Branched-chain amino acid ABC transporter ATP-binding protein.	Branched-chain amino acid ABC transporter periplasmic binding protein.	0.849
AKU12207.1	AKU12630.1	AzCIB_2312	AzCIB_2737	Branched-chain amino acid ABC transporter ATP-binding protein.	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.667
AKU12207.1	AKU14145.1	AzCIB_2312	AzCIB_4252	Branched-chain amino acid ABC transporter ATP-binding protein.	Branched-chain amino acid ABC transporter system, permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.656
AKU12207.1	AKU14516.1	AzCIB_2312	AzCIB_4630	Branched-chain amino acid ABC transporter ATP-binding protein.	Putative membrane-spanning protein; Belongs to the binding-protein-dependent transport system permease family.	0.776
AKU12207.1	mbdB2	AzCIB_2312	AzCIB_4495	Branched-chain amino acid ABC transporter ATP-binding protein.	Putative 3-methylbenzoate transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.781
AKU12208.1	AKU10250.1	AzCIB_2313	AzCIB_0345	Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.900