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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU12221.1Hypothetical protein. (418 aa)    
Predicted Functional Partners:
AKU12222.1
Di-heme cytochrome c peroxidase.
 
 
 0.807
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.770
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.742
AKU13265.1
Hypothetical protein.
    
 0.711
AKU12738.1
Phenylacetyl CoA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
   
 0.654
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.623
AKU12559.1
Transcription accessory protein.
    
 0.615
AKU10182.1
Cytochrome c, class I.
  
   
 0.605
AKU10355.1
Di-heme cytochrome c.
 
     0.578
AKU13297.1
Hypothetical protein.
  
 0.575
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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