Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12242.1Hypothetical protein. (442 aa)    
Predicted Functional Partners:
AKU12241.1
PAS/PAC sensor signal transduction histidine kinase.
 
    0.813
AKU12862.1
Hypothetical protein.
  
     0.772
AKU12240.1
Complex sensory protein.
 
 
 0.721
AKU12233.1
Response regulator receiver modulated PAS/PAC sensor; Contains diguanylate cyclase/phosphodiesterase.
 
   
 0.512
AKU10886.1
Diguanylate cyclase.
 
 
 0.486
AKU12238.1
CheW protein.
 
 
 0.477
AKU12239.1
Chemotaxis protein CheR.
   
   0.459
AKU11984.1
Diguanylate cyclase; Contains PAS/PAC and GAF sensors.
 
 
 0.458
AKU12542.1
Diguanylate cyclase/phosphodiesterase.
 
 
 0.446
AKU10422.1
Hypothetical protein.
 
 
 0.442
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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