Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12263.1RND efflux transporter. (781 aa)    
Predicted Functional Partners:
AKU12262.1
Hypothetical protein.
 
  
 0.954
AKU12264.1
Hypothetical protein.
 
    0.890
AKU12265.1
Hypothetical protein.
 
  
 0.861
AKU11360.1
Glycosyl hydrolase.
 
  
 0.825
AKU12324.1
Glycosyl hydrolase.
 
  
 0.825
AKU12416.1
Hypothetical protein.
 
  
 0.825
AKU12856.1
BNR/Asp-box repeat-containing protein.
 
  
 0.825
AKU11371.1
Endonuclease.
 
  
 0.787
AKU12325.1
Hypothetical protein.
 
  
 0.787
AKU12417.1
Conserved exported hypothetical protein.
 
  
 0.787
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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