STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU12301.1Lipoprotein. (400 aa)    
Predicted Functional Partners:
AKU12298.1
Hypothetical protein.
 
   
 0.701
AKU12299.1
Putative cytochrome c.
  
  
 0.683
AKU12300.1
Calcineurin-like phosphoesterase.
 
     0.672
AKU12297.1
ECF subfamily RNA polymerase, sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.645
AKU10077.1
YVTN family beta-propeller repeat protein.
 
 
 0.455
AKU10980.1
Cytochrome c family protein.
 
  
 0.438
AKU14219.1
Cytochrome c class I.
 
  
 0.433
AKU13761.1
Cytochrome c family protein.
 
  
 0.429
AKU12984.1
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.421
AKU11662.1
Outer membrane protein OmpW.
   
  
 0.411
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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