Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12416.1Hypothetical protein. (384 aa)    
Predicted Functional Partners:
AKU12415.1
Putative exporter, RND superfamily protein.
 
  
 0.958
AKU12417.1
Conserved exported hypothetical protein.
 
  
 0.911
AKU12418.1
Conserved exported hypothetical protein.
 
    0.877
AKU11371.1
Endonuclease.
 
  
 0.829
AKU12265.1
Hypothetical protein.
 
  
 0.829
AKU12325.1
Hypothetical protein.
 
  
 0.829
AKU12859.1
Hypothetical protein.
 
  
 0.829
AKU12263.1
RND efflux transporter.
 
  
 0.825
AKU12323.1
Transporter.
 
  
 0.825
AKU12857.1
RND efflux transporter.
 
  
 0.825
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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