Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12462.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
AKU12461.1
Hypothetical protein.
 
     0.942
AKU12459.1
Hypothetical protein.
 
     0.934
AKU12463.1
Hypothetical protein.
 
   
 0.851
AKU12464.1
Hypothetical protein.
 
     0.808
AKU12472.1
Hypothetical protein.
 
   
 0.774
AKU12480.1
Hypothetical protein.
 
     0.773
AKU12468.1
Hypothetical protein.
 
     0.766
AKU12469.1
Hypothetical protein.
 
     0.765
AKU14422.1
Hypothetical protein.
 
   
 0.765
AKU12474.1
Hypothetical protein.
 
    0.762
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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