Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12491.1Hypothetical protein; Belongs to the SOS response-associated peptidase family. (232 aa)    
Predicted Functional Partners:
AKU09909.1
Integrase; Belongs to the 'phage' integrase family.
   
    0.402
AKU11038.1
Integrase.
   
    0.402
AKU11268.1
Phage/plasmid-like protein.
   
    0.402
AKU11559.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.402
AKU11653.1
Phage integrase family protein.
   
    0.402
AKU12457.1
Hypothetical protein.
   
    0.402
AKU12509.1
Phage integrase family protein; Belongs to the 'phage' integrase family.
   
    0.402
AKU12761.1
Integrase; Belongs to the 'phage' integrase family.
   
    0.402
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.402
AKU14314.1
Phage-related integrase.
   
    0.402
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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