STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU12607.1Sigma-54 dependent transcriptional regulator. (433 aa)    
Predicted Functional Partners:
AKU12608.1
Fusion of ABC transporter-type transmembrane and ATP binding protein.
 
 
 
 0.856
AKU12609.1
Putative prolyl cis-trans isomerase.
 
   
 0.816
AKU14154.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.812
AKU10518.1
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.805
AKU12611.1
Hypothetical protein.
 
   
 0.767
AKU12610.1
Type I secretion protein.
 
     0.722
AKU13667.1
Hypothetical protein.
   
 
 0.655
AKU12240.1
Complex sensory protein.
   
 
 0.547
AKU12612.1
RND efflux system, outer membrane lipoprotein, NodT family.
 
   
 0.514
AKU12613.1
Metal dependent phosphohydrolase/3,5-cyclic-nucleotide phosphodiesterase.
     
 0.493
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.