Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKU12336.1 | AKU12658.1 | AzCIB_2441 | AzCIB_2765 | Hypothetical protein. | Hypothetical protein. | 0.842 |
AKU12336.1 | AKU12662.1 | AzCIB_2441 | AzCIB_2769 | Hypothetical protein. | Iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family. | 0.714 |
AKU12336.1 | AKU12663.1 | AzCIB_2441 | AzCIB_2770 | Hypothetical protein. | Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.804 |
AKU12336.1 | AKU12665.1 | AzCIB_2441 | AzCIB_2772 | Hypothetical protein. | Cysteine desulfurase. | 0.806 |
AKU12336.1 | AKU12666.1 | AzCIB_2441 | AzCIB_2773 | Hypothetical protein. | Rrf2 family protein. | 0.472 |
AKU12336.1 | hscA | AzCIB_2441 | AzCIB_2767 | Hypothetical protein. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.578 |
AKU12336.1 | hscB | AzCIB_2441 | AzCIB_2768 | Hypothetical protein. | Co-chaperone; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.856 |
AKU12336.1 | iscS | AzCIB_2441 | AzCIB_2771 | Hypothetical protein. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.807 |
AKU12642.1 | AKU12662.1 | AzCIB_2749 | AzCIB_2769 | Cysteine desulfurase. | Iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family. | 0.771 |
AKU12642.1 | AKU12663.1 | AzCIB_2749 | AzCIB_2770 | Cysteine desulfurase. | Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.663 |
AKU12658.1 | AKU12336.1 | AzCIB_2765 | AzCIB_2441 | Hypothetical protein. | Hypothetical protein. | 0.842 |
AKU12658.1 | AKU12659.1 | AzCIB_2765 | AzCIB_2766 | Hypothetical protein. | 2Fe-2S type ferredoxin protein. | 0.993 |
AKU12658.1 | AKU12662.1 | AzCIB_2765 | AzCIB_2769 | Hypothetical protein. | Iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family. | 0.924 |
AKU12658.1 | AKU12663.1 | AzCIB_2765 | AzCIB_2770 | Hypothetical protein. | Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.943 |
AKU12658.1 | AKU12665.1 | AzCIB_2765 | AzCIB_2772 | Hypothetical protein. | Cysteine desulfurase. | 0.857 |
AKU12658.1 | AKU12666.1 | AzCIB_2765 | AzCIB_2773 | Hypothetical protein. | Rrf2 family protein. | 0.741 |
AKU12658.1 | hscA | AzCIB_2765 | AzCIB_2767 | Hypothetical protein. | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.966 |
AKU12658.1 | hscB | AzCIB_2765 | AzCIB_2768 | Hypothetical protein. | Co-chaperone; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.989 |
AKU12658.1 | iscS | AzCIB_2765 | AzCIB_2771 | Hypothetical protein. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.903 |
AKU12659.1 | AKU12658.1 | AzCIB_2766 | AzCIB_2765 | 2Fe-2S type ferredoxin protein. | Hypothetical protein. | 0.993 |
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