Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKU12728.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
AKU12729.1
Hypothetical protein.
 
     0.654
AKU12738.1
Phenylacetyl CoA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.566
AKU12733.1
NADH-dependent phenylglyoxylate dehydrogenase subunit alpha.
 
     0.538
AKU12731.1
NADH-dependent phenylglyoxylate dehydrogenase subunit beta.
 
     0.533
AKU12732.1
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
 
     0.525
AKU12735.1
Phenylglyoxylate acceptor oxidoreductase.
 
     0.516
AKU12730.1
Anaerobic phenylacetate CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.453
AKU12734.1
Phenylglyoxylate acceptor oxidoreductase.
       0.445
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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