Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12763.1IS4 family transposase. (389 aa)    
Predicted Functional Partners:
AKU12764.1
IS4 family transposase.
     0.994
AKU12492.1
Hypothetical protein.
  
     0.659
AKU13553.1
Heparinase II/III.
  
     0.567
AKU13563.1
Hypothetical protein.
  
    0.498
AKU12765.1
WD-40 repeat protein.
  
    0.486
AKU12762.1
Hypothetical protein.
       0.483
AKU13568.1
Hypothetical protein.
  
     0.423
AKU13894.1
Transcriptional regulator, LysR family.
  
     0.414
AKU12761.1
Integrase; Belongs to the 'phage' integrase family.
 
     0.411
AKU11344.1
NERD domain-containing protein.
  
    0.407
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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