Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12857.1RND efflux transporter. (787 aa)    
Predicted Functional Partners:
AKU12856.1
BNR/Asp-box repeat-containing protein.
 
  
 0.957
AKU12858.1
Hypothetical protein.
 
    0.906
AKU12859.1
Hypothetical protein.
 
  
 0.895
AKU11360.1
Glycosyl hydrolase.
 
  
 0.825
AKU12262.1
Hypothetical protein.
 
  
 0.825
AKU12324.1
Glycosyl hydrolase.
 
  
 0.825
AKU12416.1
Hypothetical protein.
 
  
 0.825
AKU11710.1
Hypothetical protein.
 
  
 0.794
AKU11371.1
Endonuclease.
 
  
 0.787
AKU12265.1
Hypothetical protein.
 
  
 0.787
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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