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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU12932.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AKU12054.1
ATPase component dipeptide/oligopeptide/nickel ABC transporter; Belongs to the ABC transporter superfamily.
  
 0.969
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.940
trpF
N-(5-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
       0.836
trpB-2
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.811
AKU10342.1
Hypothetical protein.
 
     0.781
AKU10343.1
Hypothetical protein.
 
     0.757
AKU14128.1
Hypothetical protein.
  
  
  0.746
AKU11054.1
Periplasmic binding protein.
  
  
 0.735
AKU13810.1
ABC transporter related protein.
    
 0.735
AKU10426.1
Iron complex transport system ATP-binding protein.
 
 
 0.734
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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