Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU12986.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
AKU12988.1
Hypothetical protein.
 
     0.829
AKU12987.1
Invasion gene expression up-regulator.
 
     0.823
AKU10233.1
Hypothetical protein.
  
     0.588
AKU10220.1
Hypothetical protein.
 
     0.560
AKU12989.1
Transcriptional regulator, Crp/Fnr family.
       0.552
AKU13880.1
Hypothetical protein.
  
     0.496
AKU14037.1
Hypothetical protein.
  
     0.488
AKU12545.1
Squalene/phytoene dehydrogenase.
  
     0.472
AKU14147.1
Hypothetical protein.
  
     0.459
AKU14128.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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