Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13069.1Transcriptional regulatory protein. (353 aa)    
Predicted Functional Partners:
AKU13068.1
acyl-CoA dehydrogenase.
     
 0.529
AKU13067.1
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial.
     
 0.521
AKU11443.1
Hypothetical protein.
  
     0.520
AKU13066.1
3-methylcrotonyl-CoA carboxylase, alpha subunit.
       0.508
AKU12133.1
Hypothetical protein.
  
    0.463
AKU12431.1
Major facilitator superfamily protein.
  
  
 0.462
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.437
AKU14180.1
Transcriptional regulator, AraC family.
 
 
 0.402
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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