Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13133.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
AKU13128.1
Hypothetical protein.
 
  
 0.984
AKU13132.1
Hypothetical protein.
 
  
 0.980
AKU13131.1
Lipoprotein.
 
  
 0.977
AKU13129.1
Hypothetical protein.
 
  
 0.966
AKU13134.1
Rhs element Vgr protein.
 
  
 0.966
AKU13125.1
Hypothetical protein.
 
  
 0.958
AKU13126.1
Hypothetical protein.
 
  
 0.937
AKU13522.1
Hypothetical protein.
 
  
 0.920
AKU13127.1
Hypothetical protein.
 
  
 0.918
AKU13124.1
Hypothetical protein.
 
  
 0.911
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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