Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13134.1Rhs element Vgr protein. (925 aa)    
Predicted Functional Partners:
AKU14581.1
Rhs element Vgr protein.
 
 
0.979
AKU10053.1
Rhs element Vgr protein.
 
 
0.978
AKU13132.1
Hypothetical protein.
 
  
 0.969
AKU13133.1
Hypothetical protein.
 
  
 0.966
AKU13131.1
Lipoprotein.
 
  
 0.960
AKU13524.1
Hypothetical protein.
 
 
 0.950
AKU13128.1
Hypothetical protein.
 
  
 0.929
AKU13129.1
Hypothetical protein.
 
  
 0.928
AKU13127.1
Hypothetical protein.
 
  
 0.927
AKU13125.1
Hypothetical protein.
 
  
 0.907
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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