Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13215.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
AKU13214.1
Glycerophosphodiester phosphodiesterase.
 
  
 0.922
AKU10230.1
Periplasmic binding protein/LacI transcriptional regulator.
 
 
 0.792
AKU11725.1
Oligopeptide-binding protein oppA precursor.
  
 
 0.752
AKU12054.1
ATPase component dipeptide/oligopeptide/nickel ABC transporter; Belongs to the ABC transporter superfamily.
  
 
 0.733
AKU12932.1
Hypothetical protein.
  
 
  0.709
AKU10960.1
Polar amino acid ABC transporter; HisM; inner membrane subunit, histidine transport system permease protein.
     
 0.688
AKU10959.1
Polar amino acid ABC transporter; HisQ; inner membrane subunit, histidine transport system permease protein.
     
 0.674
AKU12895.1
Phosphate ABC transporter substrate-binding protein.
   
 
 0.667
AKU13824.1
Hypothetical protein.
   
 
 0.667
AKU10293.1
Lipooligosaccharide transport system permease protein.
     
 0.666
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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