Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13229.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
AKU13227.1
Glycolate oxidase iron-sulfur subunit.
       0.779
AKU13228.1
Glycolate oxidase FAD binding subunit.
       0.779
AKU13231.1
Transcriptional regulator, GntR family.
       0.778
AKU13230.1
Glycolate oxidase (FAD-linked subunit) oxidoreductase protein.
       0.773
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.470
AKU13226.1
Putative phosphoprotein phosphatase.
       0.457
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.433
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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