Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13244.1Type II secretion system protein E. (539 aa)    
Predicted Functional Partners:
AKU13245.1
Type II secretion system protein.
 
 
 0.968
AKU10069.1
Type II secretion system protein F.
 
 
 0.920
AKU13532.1
Type IV fimbrial biogenesis protein.
 
 
 0.919
AKU13533.1
Type IV fimbrial biogenesis protein, pilC.
 
 
 0.919
AKU10083.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
  
 
0.902
AKU13534.1
Type IV fimbrial biogenesis protein, prepilin cysteine protease; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.845
AKU13237.1
General secretion pathway protein G.
 
 
 0.830
AKU10070.1
Type II secretory pathway, pseudopilin PulG.
 
 
 0.782
AKU13242.1
Hypothetical protein.
       0.779
AKU13239.1
General secretion pathway protein D.
 
 
 
 0.777
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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