Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13257.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
AKU13255.1
Putative response regulator protein.
 
     0.800
AKU13437.1
Hypothetical protein.
 
    0.762
AKU10001.1
Hypothetical protein.
  
     0.756
AKU14128.1
Hypothetical protein.
  
     0.749
AKU13778.1
Twitching motility protein.
 
     0.734
AKU13949.1
Putative methyltransferase.
  
    0.720
AKU13216.1
Hypothetical protein.
  
     0.701
ycgR
Hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
    0.678
AKU14081.1
Peptidoglycan-binding protein.
  
     0.674
AKU11656.1
Hypothetical protein.
  
    0.659
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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