Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKU13294.1Fis family transcriptional regulator. (448 aa)    
Predicted Functional Partners:
AKU12576.1
Transcriptional regulator, Fis family.
  
  
0.921
AKU12551.1
Histidine kinase.
  
  
 0.918
AKU11056.1
Fis family transcriptional regulator.
  
  
0.917
AKU10067.1
Signal transduction histidine kinase.
     
 0.903
AKU14154.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.799
AKU13293.1
Cytochrome-c oxidase subunit II.
       0.476
AKU13292.1
Cytochrome c oxidase subunit I.
       0.475
AKU13290.1
Hypothetical protein.
       0.472
AKU13291.1
Electron transport protein SCO1/SenC.
       0.472
AKU12240.1
Complex sensory protein.
     
 0.452
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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