Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU13304.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
AKU13305.1
Hypothetical protein.
     
 0.762
AKU13306.1
Putative integron gene cassette protein.
       0.762
AKU11026.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.584
AKU11068.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.527
AKU10254.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.513
AKU13307.1
Hypothetical protein.
     
 0.494
AKU14292.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.487
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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