Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU13338.1Helix-turn-helix protein, CopG protein. (61 aa)    
Predicted Functional Partners:
AKU13335.1
Hydrogenase 4 membrane component.
 
     0.648
AKU13337.1
Hydrogenase 4 subunit B.
 
   
 0.647
AKU13336.1
Formate hydrogenlyase membrane subunit HyfD.
 
     0.637
AKU13334.1
Hydrogenase 4 subunit F.
 
   
 0.628
AKU13333.1
Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenase.
 
     0.607
AKU11811.1
Outer membrane protein.
  
     0.604
AKU13992.1
Hypothetical protein.
 
 
 0.604
AKU11292.1
Hypothetical protein.
  
 
 0.548
AKU11400.1
Plasmid stabilization system protein.
  
 
 0.548
AKU11404.1
Hypothetical protein.
  
 
 0.548
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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