Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13350.1Hypothetical protein. (364 aa)    
Predicted Functional Partners:
AKU10591.1
Putative NifQ protein.
  
    0.677
AKU11689.1
NifU-like protein.
   
    0.636
AKU12638.1
Iron sulfur cluster assembly protein SufU.
   
    0.636
AKU12663.1
Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.636
AKU13351.1
Hypothetical protein.
       0.520
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.451
AKU14504.1
BzdT protein.
 
    0.435
AKU13893.1
Hypothetical protein.
  
     0.411
bzdT
BzdT.
 
    0.405
AKU14021.1
Hypothetical protein.
 
     0.401
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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