Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU13376.1Transciptional regulator, IclR family. (272 aa)    
Predicted Functional Partners:
AKU12806.1
Transcriptional regulator.
  
     0.692
AKU13359.1
FAD dependent oxidoreductase family protein.
  
    0.602
AKU14195.1
Transcriptional regulatory protein.
  
     0.591
AKU13360.1
Hypothetical protein.
  
   
 0.587
AKU13231.1
Transcriptional regulator, GntR family.
 
  
 0.577
AKU13364.1
Sulfoacetaldehyde acetyltransferase; Belongs to the TPP enzyme family.
 
     0.573
AKU13368.1
Cobaltochelatase CobT subunit.
  
     0.545
AKU13374.1
Hypothetical protein.
 
     0.510
AKU13375.1
Phosphate acetyltransferase.
 
   
 0.469
AKU13986.1
GntR family transcriptional regulator.
  
  
 0.440
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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