Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13380.1Hypothetical protein. (538 aa)    
Predicted Functional Partners:
AKU10056.1
Type I secretion membrane fusion protein, HlyD family.
 
  
 0.763
AKU10057.1
Type I secretion system ATPase.
 
 
 0.711
AKU10058.1
Hypothetical protein.
 
 
0.648
AKU13807.1
ABC transporter ATP-binding/permease.
 
  
 0.594
AKU10384.1
Hypothetical protein.
  
     0.554
AKU11097.1
Calcium binding hemolysin protein, putative.
 
0.533
AKU14089.1
Putative transmembrane sensor protein.
 
 0.518
AKU14170.1
Hypothetical protein.
 
  
 0.511
AKU12608.1
Fusion of ABC transporter-type transmembrane and ATP binding protein.
 
  
 0.502
AKU13806.1
HlyD family secretion protein.
 
  
 0.479
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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