Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13416.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
AKU13415.1
Hypothetical protein.
       0.824
AKU13414.1
Transmembrane protein.
       0.823
AKU13417.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
       0.819
AKU13413.1
Aminopeptidase N.
       0.577
AKU13418.1
Acetolactate synthase III, large subunit.
       0.526
AKU13419.1
Acetolactate synthase 3 regulatory subunit.
       0.526
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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