Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13453.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
AKU10116.1
Hypothetical protein.
  
     0.698
AKU10180.1
Hypothetical protein.
  
     0.665
AKU11013.1
Hypothetical protein.
  
     0.639
AKU13965.1
Hypothetical protein.
  
     0.636
AKU10215.1
Hypothetical protein.
  
     0.626
AKU10276.1
Hypothetical protein.
  
     0.618
AKU12600.1
Hypothetical protein.
  
     0.603
AKU10212.1
Hypothetical protein.
  
     0.601
AKU10123.1
Protein of unknown function (DUF4401) protein.
  
     0.600
AKU12712.1
Hypothetical protein.
  
     0.596
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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