rlmD protein (Azoarcus sp. CIB) - STRING interaction network

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rlmD

23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (433 aa)

Predicted Functional Partners:

AKU13468.1

0.557

lysS

0.552

guaA

0.533

AKU14613.1

0.526

pheT

0.495

AKU12104.1

0.483

AKU13466.1

0.478

trmB

0.475

AKU13449.1

0.454

recO

0.453

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU12104.1	AKU13449.1	AzCIB_2209	AzCIB_3556	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.510
AKU12104.1	pheT	AzCIB_2209	AzCIB_3590	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.603
AKU12104.1	rlmD	AzCIB_2209	AzCIB_3574	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.483
AKU13449.1	AKU12104.1	AzCIB_3556	AzCIB_2209	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.510
AKU13449.1	guaA	AzCIB_3556	AzCIB_1821	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.450
AKU13449.1	pheT	AzCIB_3556	AzCIB_3590	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.533
AKU13449.1	rlmD	AzCIB_3556	AzCIB_3574	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.454
AKU13449.1	trmB	AzCIB_3556	AzCIB_4393	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	tRNA (guanine-N(7))-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.483
AKU13466.1	rlmD	AzCIB_3573	AzCIB_3574	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.478
AKU13468.1	rlmD	AzCIB_3575	AzCIB_3574	Hypothetical protein.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.557
AKU14613.1	guaA	AzCIB_4728	AzCIB_1821	Putative tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.522
AKU14613.1	pheT	AzCIB_4728	AzCIB_3590	Putative tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.533
AKU14613.1	rlmD	AzCIB_4728	AzCIB_3574	Putative tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.526
AKU14613.1	trmB	AzCIB_4728	AzCIB_4393	Putative tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	tRNA (guanine-N(7))-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.553
guaA	AKU13449.1	AzCIB_1821	AzCIB_3556	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.450
guaA	AKU14613.1	AzCIB_1821	AzCIB_4728	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Putative tRNA and rRNA cytosine-C5-methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.522
guaA	lysS	AzCIB_1821	AzCIB_2673	GMP synthase; Catalyzes the synthesis of GMP from XMP.	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.921
guaA	pheT	AzCIB_1821	AzCIB_3590	GMP synthase; Catalyzes the synthesis of GMP from XMP.	phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.908
guaA	rlmD	AzCIB_1821	AzCIB_3574	GMP synthase; Catalyzes the synthesis of GMP from XMP.	23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.533
lysS	guaA	AzCIB_2673	AzCIB_1821	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.921

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