Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13498.1Heme biosynthesis protein. (395 aa)    
Predicted Functional Partners:
AKU13496.1
NirG protein.
 
  
 0.985
AKU13499.1
Hypothetical protein.
 
 
 0.985
AKU13495.1
Heme biosynthesis protein.
 
    0.981
AKU13497.1
Putative transcriptional regulator, AsnC family.
 
  
 0.976
AKU13494.1
Nitrite reductase.
 
 
 0.902
AKU13490.1
Heme biosynthesis protein.
 
  
 0.886
AKU13501.1
Nitrite reductase.
 
 
 0.876
AKU11224.1
Nitric oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.861
AKU13489.1
Cytochrome c-type.
 
 
0.826
AKU11225.1
Nitric-oxide reductase subunit C.
 
 
 0.790
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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