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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU13641.1cAMP phosphodiesterase. (267 aa)    
Predicted Functional Partners:
AKU11638.1
Putative protease.
  
   0.823
AKU13642.1
FHA domain-containing protein.
 
     0.807
AKU12613.1
Metal dependent phosphohydrolase/3,5-cyclic-nucleotide phosphodiesterase.
 
   0.704
AKU12918.1
Hypothetical protein.
  
     0.699
AKU12917.1
Hypothetical protein.
 
 
   0.677
AKU13640.1
Type II secretion system protein E.
       0.632
AKU12558.1
Aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
  
 
   0.610
AKU11500.1
Hypothetical protein.
 
 
   0.600
AKU13643.1
Phosphoprotein phosphatase.
 
     0.593
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.533
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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