Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13656.1Hypothetical protein; Belongs to the BI1 family. (221 aa)    
Predicted Functional Partners:
AKU13657.1
Hypothetical protein.
  
  
 0.691
htpX
Heat shock protein; Belongs to the peptidase M48B family.
  
  
 0.519
bamE
Putative outer membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.501
msrB
Peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.458
AKU13788.1
Hypothetical protein.
  
     0.403
AKU09996.1
Hypothetical protein.
   
  
 0.400
AKU11139.1
Hypothetical protein.
   
  
 0.400
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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