Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13731.1Hypothetical protein. (716 aa)    
Predicted Functional Partners:
AKU10076.1
Hypothetical protein.
  
     0.705
AKU10410.1
Lipopolysaccharide core biosynthesis protein.
  
     0.611
AKU10086.1
General secretion pathway protein M.
  
     0.610
AKU13732.1
ABC subunit of A-band LPS efflux transporter.
 
     0.589
AKU12373.1
Transposase.
  
     0.544
AKU10080.1
ABC-type branched-chain amino acid transport system, periplasmic component.
  
     0.536
AKU14360.1
TnpA.
  
     0.528
AKU10077.1
YVTN family beta-propeller repeat protein.
  
     0.517
AKU10067.1
Signal transduction histidine kinase.
  
     0.477
AKU13733.1
ABC transporter.
 
     0.471
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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